HIV-1 Rev in complex with tubulin
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7u0f
Q-score: 0.344
Eren E, Watts NR, Randazzo D, Palmer I, Sackett DL, Wingfield PT
Structure (2023) 31 pp. 1233- [ Pubmed: 37572662 DOI: doi:10.1016/j.str.2023.07.009 ]
- Protein rev (13 kDa, Protein from Human immunodeficiency virus 1)
- Tubulin alpha-1a chain (50 kDa, Protein from Sus scrofa)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Hiv-1 rev in complex with tubulin (4 MDa, Complex from Human immunodeficiency virus 1Human immunodeficiency virus 1)
Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gq5
Q-score: 0.492
Hou YN, Cai Y, Li WH, He WM, Zhao ZY, Zhu WJ, Wang Q, Mai X, Liu J, Lee HC, Stjepanovic G, Zhang H, Zhao YJ
Nat Commun (2022) 13 pp. 7898-7898 [ Pubmed: 36550129 DOI: doi:10.1038/s41467-022-35581-y ]
- Nanobody c6 (13 kDa, Protein from Vicugna pacos)
- Nad(+) hydrolase sarm1 (79 kDa, Protein from Homo sapiens)
- Human sarm1 bounded with nmn and nanobody-c6, double-layer structure (Complex from Homo sapiens)
Refined capsid structure of human adenovirus D26 at 3.4 A resolution
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 7tau
Q-score: 0.04
Viruses (2022) 14 [ Pubmed: 35216007 DOI: doi:10.3390/v14020414 ]
- Pre-hexon-linking protein iiia (62 kDa, Protein from Human adenovirus 26)
- Penton protein (58 kDa, Protein from Human adenovirus 26)
- Fiber (41 kDa, Protein from Human adenovirus 26)
- Pviii (24 kDa, Protein from Human adenovirus 26)
- Human adenovirus 26 (Tissue from Human adenovirus 26)
- Pix (13 kDa, Protein from Human adenovirus 26)
- Pre-protein vi (25 kDa, Protein from Human adenovirus 26)
- Hexon protein (107 kDa, Protein from Human adenovirus 26)
- Unknown fragment (1 kDa, Protein from Human adenovirus 26)
Human NALCN-FAM155A-UNC79-UNC80 channelosome with CaM bound, conformation 1/2
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7sx3
Q-score: 0.47
Kschonsak M, Chua HC, Weidling C, Chakouri N, Noland CL, Schott K, Chang T, Tam C, Patel N, Arthur CP, Leitner A, Ben-Johny M, Ciferri C, Pless SA, Payandeh J
Nature (2022) 603 pp. 180-186 [ DOI: doi:10.1038/s41586-021-04313-5 Pubmed: 34929720 ]
- Transmembrane protein fam155a (54 kDa, Protein from Homo sapiens)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
- Protein unc-80 homolog (366 kDa, Protein from Homo sapiens)
- Unc79,protein unc-79 homolog,protein unc-79 homolog (285 kDa, Protein from Homo sapiens)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Sodium leak channel non-selective protein,enhanced green fluorescent protein (234 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pentameric complex of the leak channel nalcn with fam155a, calmodulin, unc79 and unc80 (Complex from Homo sapiens)
Human NALCN-FAM155A-UNC79-UNC80 channelosome with CaM bound, conformation 2/2
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7sx4
Q-score: 0.359
Kschonsak M, Chua HC, Weidling C, Chakouri N, Noland CL, Schott K, Chang T, Tam C, Patel N, Arthur CP, Leitner A, Ben-Johny M, Ciferri C, Pless SA, Payandeh J
Nature (2022) 603 pp. 180-186 [ DOI: doi:10.1038/s41586-021-04313-5 Pubmed: 34929720 ]
- Transmembrane protein fam155a (54 kDa, Protein from Homo sapiens)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
- Protein unc-80 homolog (366 kDa, Protein from Homo sapiens)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Unc79,protein unc-79 homolog (285 kDa, Protein from Homo sapiens)
- Sodium leak channel non-selective protein,enhanced green fluorescent protein (234 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pentameric complex of the leak channel nalcn with fam155a, calmodulin, unc79 and unc80 (Complex from Homo sapiens)
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 7s78
Q-score: 0.471
Yu X, Mullen TM, Abrishami V, Huiskonen JT, Nemerow GR, Reddy VS
J Mol Biol (2021) 434 pp. 167350-167350 [ DOI: doi:10.1016/j.jmb.2021.167350 Pubmed: 34774568 ]
- Pre-hexon-linking protein viii (24 kDa, Protein from HAdV-5)
- Pre-hexon-linking protein iiia (65 kDa, Protein from HAdV-5)
- Hexon protein (108 kDa, Protein from HAdV-5)
- Pre-protein vi (27 kDa, Protein from HAdV-5, Human adenovirus 5)
- Human adenovirus c serotype 5 (150 MDa, Virus from Human adenovirus C serotype 5)
- Hexon-interlacing protein (14 kDa, Protein from HAdV-5)
- Unknown-2 (869 Da, Protein from HAdV-5)
- Unknown-1 (1 kDa, Protein from HAdV-5)
- Penton protein (63 kDa, Protein from HAdV-5)
80S ribosome from mouse bound to eEF2 (Class II)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ls1
Q-score: 0.374
Smith PR, Loerch S, Kunder N, Stanowick AD, Lou TF, Campbell ZT
Nat Commun (2021) 12 pp. 6789-6789 [ Pubmed: 34815424 DOI: doi:10.1038/s41467-021-27160-4 ]
- 40s ribosomal protein s14 (16 kDa, Protein from Mouse)
- 60s ribosomal protein l22 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s30 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l8 (28 kDa, Protein from Mouse)
- 40s ribosomal protein s27-like (9 kDa, Protein from Mouse)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l15 (24 kDa, Protein from Mouse)
- 60s ribosomal protein l29 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s8 (24 kDa, Protein from Mouse)
- 28s rrna (1 MDa, RNA from Mus musculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Mouse)
- 60s ribosomal protein l7 (31 kDa, Protein from Mouse)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mouse)
- Isoform 3 of plasminogen activator inhibitor 1 rna-binding protein (42 kDa, Protein from Mouse)
- 60s ribosomal protein l37a (10 kDa, Protein from Mouse)
- 40s ribosomal protein s11 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l13a (23 kDa, Protein from Mouse)
- 60s ribosomal protein l23a (17 kDa, Protein from Mouse)
- 60s ribosomal protein l26 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s21 (9 kDa, Protein from Mouse)
- 60s ribosomal protein l34 (13 kDa, Protein from Mouse)
- Water (18 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Mouse)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 60s ribosomal protein l27 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l28 (15 kDa, Protein from Mouse)
- Elongation factor 2 (95 kDa, Protein from Mouse)
- Trna (24 kDa, RNA from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mouse)
- 40s ribosomal protein s18 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s7 (22 kDa, Protein from Mouse)
- 60s ribosomal protein l7a (30 kDa, Protein from Mouse)
- 60s ribosomal protein l27a (16 kDa, Protein from Mouse)
- 40s ribosomal protein s5 (22 kDa, Protein from Mouse)
- 40s ribosomal protein s29 (6 kDa, Protein from Mouse)
- 40s ribosomal protein s2 (31 kDa, Protein from Mouse)
- 60s ribosomal protein l35 (14 kDa, Protein from Mouse)
- 40s ribosomal protein sa (32 kDa, Protein from Mouse)
- 60s ribosomal protein l11 (20 kDa, Protein from Mouse)
- 60s ribosomal protein l32 (15 kDa, Protein from Mouse)
- 28s rrna (603 kDa, RNA from Mus musculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Mouse)
- 60s ribosomal protein l38 (8 kDa, Protein from Mouse)
- 40s ribosomal protein s13 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s3 (26 kDa, Protein from Mouse)
- 60s ribosomal protein l17 (21 kDa, Protein from Mouse)
- 40s ribosomal protein s26 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l39 (6 kDa, Protein from Mouse)
- 60s ribosomal protein l30 (12 kDa, Protein from Mouse)
- 40s ribosomal protein s3a (29 kDa, Protein from Mouse)
- 60s ribosomal protein l3 (46 kDa, Protein from Mouse)
- 60s ribosomal protein l31 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s25 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l36a (12 kDa, Protein from Mouse)
- 40s ribosomal protein s10 (18 kDa, Protein from Mouse)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s23 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l37 (11 kDa, Protein from Mouse)
- 40s ribosomal protein s15a (14 kDa, Protein from Mouse)
- 40s ribosomal protein s28 (7 kDa, Protein from Mouse)
- 60s ribosomal protein l4 (47 kDa, Protein from Mouse)
- 60s ribosomal protein l6 (33 kDa, Protein from Mouse)
- 40s ribosomal protein s20 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l10a (24 kDa, Protein from Mouse)
- 5s rrna (38 kDa, RNA from Mus musculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Mouse)
- 60s ribosomal protein l18a (20 kDa, Protein from Mouse)
- 40s ribosomal protein s24 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l24 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s6 (28 kDa, Protein from Mouse)
- 60s ribosomal protein l18 (21 kDa, Protein from Mouse)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mouse)
- 60s ribosomal protein l21 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l13 (24 kDa, Protein from Mouse)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Mouse)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Mouse)
- 60s ribosomal protein l35a (12 kDa, Protein from Mouse)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l19 (23 kDa, Protein from Mouse)
- 60s ribosomal protein l12 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s17 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l23 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l5 (34 kDa, Protein from Mouse)
- 40s ribosomal protein s15 (17 kDa, Protein from Mouse)
- 80s ribosome from mous ebound to eef2 (4 MDa, Complex from Mus musculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l9 (21 kDa, Protein from Mouse)
- 5.8s rrna (55 kDa, RNA from Mus musculus)
- 60s ribosomal protein l10-like (24 kDa, Protein from Mouse)
- 40s ribosomal protein s19 (16 kDa, Protein from Mouse)
80S ribosome from mouse bound to eEF2 (Class I)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ls2
Q-score: 0.418
Smith PR, Loerch S, Kunder N, Stanowick AD, Lou TF, Campbell ZT
Nat Commun (2021) 12 pp. 6789-6789 [ Pubmed: 34815424 DOI: doi:10.1038/s41467-021-27160-4 ]
- 40s ribosomal protein s14 (16 kDa, Protein from Mouse)
- 60s ribosomal protein l22 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s30 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l8 (28 kDa, Protein from Mouse)
- 5.8s rrna (50 kDa, RNA from Mus musculus)
- 40s ribosomal protein s27-like (9 kDa, Protein from Mouse)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l15 (24 kDa, Protein from Mouse)
- 60s ribosomal protein l29 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s8 (24 kDa, Protein from Mouse)
- 40s ribosomal protein s9 (22 kDa, Protein from Mouse)
- 60s ribosomal protein l7 (31 kDa, Protein from Mouse)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mouse)
- Isoform 3 of plasminogen activator inhibitor 1 rna-binding protein (42 kDa, Protein from Mouse)
- 60s ribosomal protein l37a (10 kDa, Protein from Mouse)
- 40s ribosomal protein s11 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l13a (23 kDa, Protein from Mouse)
- 60s ribosomal protein l23a (17 kDa, Protein from Mouse)
- 60s ribosomal protein l26 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s21 (9 kDa, Protein from Mouse)
- 60s ribosomal protein l34 (13 kDa, Protein from Mouse)
- Water (18 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Mouse)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 60s ribosomal protein l27 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l28 (15 kDa, Protein from Mouse)
- Elongation factor 2 (95 kDa, Protein from Mouse)
- Trna (24 kDa, RNA from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mouse)
- 40s ribosomal protein s18 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s7 (22 kDa, Protein from Mouse)
- 60s ribosomal protein l7a (30 kDa, Protein from Mouse)
- 60s ribosomal protein l27a (16 kDa, Protein from Mouse)
- 40s ribosomal protein s2 (31 kDa, Protein from Mouse)
- 40s ribosomal protein s5 (22 kDa, Protein from Mouse)
- 40s ribosomal protein s29 (6 kDa, Protein from Mouse)
- 28s rrna (1 MDa, RNA from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mouse)
- 40s ribosomal protein sa (32 kDa, Protein from Mouse)
- 60s ribosomal protein l11 (20 kDa, Protein from Mouse)
- 60s ribosomal protein l32 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l14 (23 kDa, Protein from Mouse)
- 60s ribosomal protein l38 (8 kDa, Protein from Mouse)
- 40s ribosomal protein s13 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s3 (26 kDa, Protein from Mouse)
- 60s ribosomal protein l17 (21 kDa, Protein from Mouse)
- 40s ribosomal protein s26 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l39 (6 kDa, Protein from Mouse)
- 60s ribosomal protein l30 (12 kDa, Protein from Mouse)
- 40s ribosomal protein s3a (29 kDa, Protein from Mouse)
- 60s ribosomal protein l3 (46 kDa, Protein from Mouse)
- 60s ribosomal protein l31 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s25 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l36a (12 kDa, Protein from Mouse)
- 40s ribosomal protein s10 (18 kDa, Protein from Mouse)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s23 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l37 (11 kDa, Protein from Mouse)
- 40s ribosomal protein s15a (14 kDa, Protein from Mouse)
- 40s ribosomal protein s28 (7 kDa, Protein from Mouse)
- 60s ribosomal protein l4 (47 kDa, Protein from Mouse)
- 60s ribosomal protein l6 (33 kDa, Protein from Mouse)
- 40s ribosomal protein s20 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l10a (24 kDa, Protein from Mouse)
- 5s rrna (38 kDa, RNA from Mus musculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Mouse)
- 60s ribosomal protein l18a (20 kDa, Protein from Mouse)
- 40s ribosomal protein s24 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l24 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s6 (28 kDa, Protein from Mouse)
- 60s ribosomal protein l18 (21 kDa, Protein from Mouse)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mouse)
- 60s ribosomal protein l21 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l13 (24 kDa, Protein from Mouse)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Mouse)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Mouse)
- 18s rrna (603 kDa, RNA from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mouse)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l19 (23 kDa, Protein from Mouse)
- 60s ribosomal protein l12 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s17 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l23 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l5 (34 kDa, Protein from Mouse)
- 40s ribosomal protein s15 (17 kDa, Protein from Mouse)
- 80s ribosome from mous ebound to eef2 (4 MDa, Complex from Mus musculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l9 (21 kDa, Protein from Mouse)
- 60s ribosomal protein l10-like (24 kDa, Protein from Mouse)
- 40s ribosomal protein s19 (16 kDa, Protein from Mouse)
Engineered disulfide cross-linked closed conformation of the Yeast gamma-TuRC(SS)
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 7m2w
Q-score: 0.435
Brilot AF, Lyon AS, Zelter A, Viswanath S, Maxwell A, MacCoss MJ, Muller EG, Sali A, Davis TN, Agard DA
eLife (2021) 10 [ DOI: doi:10.7554/eLife.65168 Pubmed: 33949948 ]
- Spindle pole body component spc97 (96 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Engineered disulfide cross-linked closed conformation of the yeast gamma-turc(ss) (Complex from Saccharomyces cerevisiae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Spindle pole body component spc98 (98 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Tubulin gamma chain (52 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Spindle pole body component 110 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))